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ZEAMAP, a Comprehensive Database Adapted to the Maize Multi-Omics Era

信息来源:     发布时间:2020-07-08

Songtao Gui, Linfeng Yang, Jianbo Li…….Qiang Gao, Ning Yang, Jianbing Yan, Show all authors, Show footnotes


Published:June 05, 2020DOI:https://doi.org/10.1016/j.isci.2020.101241

VOLUME 23, ISSUE 6, 101241, JUNE 26, 2020

Summary

As one of the most extensively cultivated crops, maize (Zea mays L.) has been extensively studied by researchers and breeders for over a century. With advances in high-throughput detection of various omics data, a wealth of multi-dimensional and multi-omics information has been accumulated for maize and its wild relative, teosinte. Integration of this information has the potential to accelerate genetic research and generate improvements in maize agronomic traits. To this end, we constructed ZEAMAP, a comprehensive database incorporating multiple reference genomes, annotations, comparative genomics, transcriptomes, open chromatin regions, chromatin interactions, high-quality genetic variants, phenotypes, metabolomics, genetic maps, genetic mapping loci, population structures, and populational DNA methylation signals within maize inbred lines. ZEAMAP is user friendly, with the ability to interactively integrate, visualize, and cross-reference multiple different omics datasets.

Graphical Abstract


 


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